Transcript: VDR-002 OTTHUMT00000406435.1

Description

vitamin D (1,25- dihydroxyvitamin D3) receptor

Location

Chromosome 12: 47,842,628-47,905,003 reverse strand.

About this transcript

This transcript has 10 exons and is annotated with 32 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000169890 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
VDR-001	OTTHUMT00000406433.1	4762	427aa	OTTHUMP00000242391	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS8757	P11473
VDR-004	OTTHUMT00000406434.2	4644	427aa	OTTHUMP00000242392	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS8757	P11473
VDR-002	OTTHUMT00000406435.1	3925	477aa	OTTHUMP00000242393	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS55820	-
VDR-007	OTTHUMT00000406438.2	937	250aa	OTTHUMP00000242395	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F8VRJ4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
VDR-006	OTTHUMT00000406440.2	596	101aa	OTTHUMP00000242397	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F8VPF8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
VDR-008	OTTHUMT00000406439.2	562	106aa	OTTHUMP00000242396	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F8VVY8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
VDR-005	OTTHUMT00000406436.1	1078	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
VDR-003	OTTHUMT00000406437.1	1782	49aa	OTTHUMP00000242394	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F8VXQ9

Summary

Statistics

Exons: 10 Transcript length: 3,925 bps Translation length: 477 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS55820

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 27/01/2011)

Alternative symbols

RP5-1057I20.3-002

Other assemblies

This transcript maps to 47,842,628-47,905,003 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000550325

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: VDR-002 OTTHUMT00000406435.1

Summary

Transcript-based displays