Transcript: PALB2-001 OTTHUMT00000435287.2

Description

partner and localizer of BRCA2

Location

About this transcript

This transcript has 13 exons and is annotated with 12 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
PALB2-001	OTTHUMT00000435287.2	4003	1186aa	OTTHUMP00000255811	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS32406	Q86YC2
PALB2-002	OTTHUMT00000435286.4	3963	891aa	OTTHUMP00000255810	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
PALB2-006	OTTHUMT00000435290.3	815	89aa	OTTHUMP00000258780	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
PALB2-005	OTTHUMT00000435285.3	626	43aa	OTTHUMP00000258778	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
PALB2-004	OTTHUMT00000435288.3	344	30aa	OTTHUMP00000258779	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
PALB2-003	OTTHUMT00000435289.2	789	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 13 Transcript length: 4,003 bps Translation length: 1,186 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS32406

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 15/05/2015 (Created on 27/09/2011)

Alternative symbols

CTD-2196E14.2-001

Other assemblies

This transcript maps to 23,603,170-23,641,310 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000261584

Curation Method

Manual annotation from Havana