Transcript: RFX1-005 OTTHUMT00000458514.2

Description

regulatory factor X, 1 (influences HLA class II expression)

Location

About this transcript

This transcript has 5 exons and is annotated with 7 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
RFX1-001	OTTHUMT00000458510.1	4332	979aa	OTTHUMP00000268009	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS12301	P22670
RFX1-005	OTTHUMT00000458514.2	886	158aa	OTTHUMP00000268010	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
RFX1-006	OTTHUMT00000458515.1	440	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
RFX1-002	OTTHUMT00000458511.1	2122	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
RFX1-004	OTTHUMT00000458513.1	848	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
RFX1-003	OTTHUMT00000458512.1	540	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
RFX1-007	OTTHUMT00000458523.1	241	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 886 bps Translation length: 158 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 21/05/2012)

Alternative symbols

CTD-3252C9.10-005

Remarks

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 13,983,313-14,006,262 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000588885

Curation Method

Manual annotation from Havana