Description
procollagen type XVI alpha 1
Location
Chromosome 4: 130,047,840-130,099,283 forward strand.
View alleles of this gene on alternate assemblies
About this gene
This gene has 13 transcripts (splice variants) and 1 gene allele.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Col16a1-001 | OTTMUST00000021751.2 | 5206 | 1580aa | OTTMUSP00000009921 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS38889 | Q8BLX7 | |
| Col16a1-004 | OTTMUST00000021754.3 | 4037 | 1283aa | OTTMUSP00000009924 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A3KFV7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Col16a1-012 | OTTMUST00000021762.3 | 452 | 129aa | OTTMUSP00000023722 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A3KFV6 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Col16a1-005 | OTTMUST00000021755.2 | 410 | 22aa | OTTMUSP00000009925 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A3KFV1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Col16a1-006 | OTTMUST00000021756.2 | 383 | 61aa | OTTMUSP00000009926 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A3KFV2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Col16a1-002 | OTTMUST00000021752.5 | 5138 | 1046aa | OTTMUSP00000042281 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | E9Q0X4 | |
| Col16a1-003 | OTTMUST00000021753.5 | 4574 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Col16a1-009 | OTTMUST00000021759.2 | 3519 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Col16a1-013 | OTTMUST00000050688.1 | 833 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Col16a1-011 | OTTMUST00000021761.4 | 717 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Col16a1-008 | OTTMUST00000021758.1 | 445 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Col16a1-010 | OTTMUST00000021760.2 | 322 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Col16a1-007 | OTTMUST00000021757.1 | 477 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
