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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
Gene expression
External references
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Gene: Col25a1 OTTMUSG00000022680

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Description

procollagen type XXV alpha 1

Location

Chromosome 3: 130,131,501-130,599,877 forward strand.

About this gene

This gene has 6 transcripts (splice variants), 26 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Col25a1-001	OTTMUST00000054364.1	6701	640aa	OTTMUSP00000025947	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS38636	E9Q5L6
Col25a1-002	OTTMUST00000054365.2	2624	666aa	OTTMUSP00000025948	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS38637	Q99MQ5
Col25a1-004	OTTMUST00000054367.2	3778	593aa	OTTMUSP00000065372	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	V9GWX5
Col25a1-005	OTTMUST00000135662.1	1078	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Col25a1-003	OTTMUST00000054366.2	3514	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Col25a1-006	OTTMUST00000135679.1	2723	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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