Description
very low density lipoprotein receptor
Location
Chromosome 19: 27,216,484-27,254,231 forward strand.
About this gene
This gene has 9 transcripts (splice variants), 15 orthologues and 12 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Vldlr-001 | OTTMUST00000092260.4 | 7971 | 873aa | OTTMUSP00000050945 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS29721 | P98156 | |
| Vldlr-002 | OTTMUST00000092267.3 | 3855 | 845aa | OTTMUSP00000050950 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS50411 | Q91YY0 | |
| Vldlr-006 | OTTMUST00000092275.2 | 3260 | 804aa | OTTMUSP00000050956 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F8WGI9 | |
| Vldlr-009 | OTTMUST00000092295.2 | 774 | 258aa | OTTMUSP00000050969 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F6RKS4 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| Vldlr-007 | OTTMUST00000092292.2 | 454 | 89aa | OTTMUSP00000050966 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9Q643 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Vldlr-004 | OTTMUST00000092272.1 | 2356 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Vldlr-005 | OTTMUST00000092274.1 | 3253 | 498aa | OTTMUSP00000050955 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F8WIN7 | |
| Vldlr-008 | OTTMUST00000092293.1 | 511 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Vldlr-003 | OTTMUST00000092271.1 | 4895 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
