Description
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Location
Chromosome 7: 45,339,122-45,367,019 reverse strand.
About this gene
This gene has 10 transcripts (splice variants), 5 orthologues and 3 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Ppfia3-011 | OTTMUST00000146823.1 | 4647 | 1194aa | OTTMUSP00000076379 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS52246 | P60469 | |
| Ppfia3-001 | OTTMUST00000058159.3 | 4565 | 1194aa | OTTMUSP00000028135 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS52246 | P60469 | |
| Ppfia3-003 | OTTMUST00000058211.1 | 3899 | 1034aa | OTTMUSP00000028173 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GRM4 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Ppfia3-009 | OTTMUST00000145812.1 | 4843 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Ppfia3-007 | OTTMUST00000058157.1 | 4173 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Ppfia3-010 | OTTMUST00000145811.1 | 4575 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Ppfia3-002 | OTTMUST00000058158.2 | 4893 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia3-008 | OTTMUST00000145813.1 | 2909 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia3-006 | OTTMUST00000058214.2 | 1467 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Ppfia3-005 | OTTMUST00000058213.1 | 1060 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
