Transcript: Rfx3-004 OTTMUST00000097175.1

Description

regulatory factor X, 3 (influences HLA class II expression)

Location

About this transcript

This transcript has 19 exons and is annotated with 12 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Rfx3-001	OTTMUST00000097173.1	2743	749aa	OTTMUSP00000054439	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29725	P48381
Rfx3-004	OTTMUST00000097175.1	2621	749aa	OTTMUSP00000054440	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29725	P48381
Rfx3-003	OTTMUST00000097172.1	4274	724aa	OTTMUSP00000054438	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G5E890
Rfx3-007	OTTMUST00000097178.2	343	71aa	OTTMUSP00000054442	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G3UZZ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Rfx3-005	OTTMUST00000097176.1	2053	458aa	OTTMUSP00000054441	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	G3UWP0
Rfx3-006	OTTMUST00000097174.1	2091	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Rfx3-002	OTTMUST00000097177.1	3039	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 19 Transcript length: 2,621 bps Translation length: 749 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29725

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 22/03/2011)

Alternative symbols

RP23-318J14.1-004

Remarks

alternative 5' UTR

Other assemblies

This transcript maps to 27,768,318-28,011,045 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000172907

Curation Method

Manual annotation from Havana