Transcript: Rfx3-007 OTTMUST00000097178.2

Description

regulatory factor X, 3 (influences HLA class II expression)

Location

About this transcript

This transcript has 3 exons and is annotated with 4 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Rfx3-001	OTTMUST00000097173.1	2743	749aa	OTTMUSP00000054439	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29725	P48381
Rfx3-004	OTTMUST00000097175.1	2621	749aa	OTTMUSP00000054440	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29725	P48381
Rfx3-003	OTTMUST00000097172.1	4274	724aa	OTTMUSP00000054438	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G5E890
Rfx3-007	OTTMUST00000097178.2	343	71aa	OTTMUSP00000054442	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G3UZZ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Rfx3-005	OTTMUST00000097176.1	2053	458aa	OTTMUSP00000054441	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	G3UWP0
Rfx3-006	OTTMUST00000097174.1	2091	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Rfx3-002	OTTMUST00000097177.1	3039	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 343 bps Translation length: 71 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/07/2015 (Created on 22/03/2011)

Alternative symbols

RP23-318J14.1-007

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 27,867,515-28,010,790 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000174420

Curation Method

Manual annotation from Havana