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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
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Gene: MSH2 OTTHUMG00000128861

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Description

mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)

Synonyms

HNPCC, HNPCC1

Location

Chromosome 2: 47,402,969-47,562,311 forward strand.

VEGA68:CM000664.2

About this gene

This gene has 6 transcripts (splice variants), 3 orthologues and 2 paralogues.

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
MSH2-001	OTTHUMT00000250805.3	3307	934aa	OTTHUMP00000159084	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1834	P43246
MSH2-002	OTTHUMT00000323353.3	3628	921aa	OTTHUMP00000200306	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E9PHA6
MSH2-003	OTTHUMT00000323405.2	560	140aa	OTTHUMP00000200337	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	C9J809	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
MSH2-004	OTTHUMT00000323637.1	2560	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
MSH2-005	OTTHUMT00000323721.1	416	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
MSH2-006	OTTHUMT00000323722.1	313	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

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Summary

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Gene-based displays