This is an archived version of Vega. Click here for more information.

Human

Loading…

Help & Documentation

Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
Gene expression
External references
Supporting evidence
Other genome browsers
- Ensembl

Configure this page

Share this page

Bookmark this page

.

Gene: SYNPO2 OTTHUMG00000161165

.

Description

synaptopodin 2

Synonyms

MYOPODIN

Location

Chromosome 4: 118,850,688-119,061,247 forward strand.

VEGA68:CM000666.2

About this gene

This gene has 6 transcripts (splice variants), 2 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SYNPO2-003	OTTHUMT00000364020.2	9920	1093aa	OTTHUMP00000219832	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47129	Q9UMS6
SYNPO2-001	OTTHUMT00000364018.2	7295	1261aa	OTTHUMP00000219830	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS34054	-
SYNPO2-006	OTTHUMT00000480984.2	3934	1230aa	OTTHUMP00000278414	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS75185	-
SYNPO2-002	OTTHUMT00000364019.2	3588	1109aa	OTTHUMP00000219831	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47128	-
SYNPO2-004	OTTHUMT00000364021.2	6779	1155aa	OTTHUMP00000222246	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SYNPO2-005	OTTHUMT00000364022.1	1335	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-

.

Summary

.

.

Gene-based displays