Description
synaptic Ras GTPase activating protein 1 homolog (rat)
Synonyms
RASA5, KIAA1938, SYNGAP
Location
Chromosome 6: 33,419,661-33,457,541 forward strand.
VEGA68:CM000668.2
View alleles of this gene on alternate assemblies
About this gene
This gene has 29 transcripts (splice variants), 1 gene allele, 12 orthologues and 10 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SYNGAP1-001 | OTTHUMT00000076151.5 | 9862 | 1343aa | OTTHUMP00000029119 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS34434 | Q96PV0 | |
| SYNGAP1-010 | OTTHUMT00000342678.2 | 5828 | 1285aa | OTTHUMP00000278516 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SYNGAP1-003 | OTTHUMT00000258901.1 | 4339 | 1284aa | OTTHUMP00000165802 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SYNGAP1-007 | OTTHUMT00000258905.3 | 4264 | 1299aa | OTTHUMP00000275564 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SYNGAP1-009 | OTTHUMT00000342677.4 | 3930 | 1306aa | OTTHUMP00000209046 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | B7ZCA0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNGAP1-025 | OTTHUMT00000490352.1 | 123 | 25aa | OTTHUMP00000282657 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNGAP1-006 | OTTHUMT00000342676.2 | 1912 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SYNGAP1-004 | OTTHUMT00000258902.4 | 4556 | 1284aa | OTTHUMP00000275563 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A0A0MQZ2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNGAP1-005 | OTTHUMT00000258903.2 | 2499 | 592aa | OTTHUMP00000282656 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GW70 | |
| SYNGAP1-019 | OTTHUMT00000490347.1 | 191 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-024 | OTTHUMT00000490351.1 | 190 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-014 | OTTHUMT00000490339.1 | 161 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-030 | OTTHUMT00000490357.1 | 161 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-012 | OTTHUMT00000490341.1 | 157 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-016 | OTTHUMT00000490340.1 | 148 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-021 | OTTHUMT00000490344.1 | 148 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-013 | OTTHUMT00000490342.1 | 132 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-027 | OTTHUMT00000490354.1 | 118 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-011 | OTTHUMT00000490338.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-017 | OTTHUMT00000490345.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-018 | OTTHUMT00000490346.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-022 | OTTHUMT00000490349.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-023 | OTTHUMT00000490350.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-026 | OTTHUMT00000490353.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-028 | OTTHUMT00000490355.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-029 | OTTHUMT00000490356.1 | 100 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-020 | OTTHUMT00000490348.1 | 79 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNGAP1-002 | OTTHUMT00000258900.4 | 2073 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNGAP1-008 | OTTHUMT00000258906.1 | 394 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
