Transcript: CECR2-004 OTTHUMT00000340298.2

Description

cat eye syndrome chromosome region, candidate 2

Location

About this transcript

This transcript has 4 exons and is annotated with 1 domain and feature.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
CECR2-002	OTTHUMT00000316226.2	4833	1300aa	OTTHUMP00000196214	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS77646	B7WPH3
CECR2-001	OTTHUMT00000316104.7	9645	1442aa	OTTHUMP00000276128	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	B7WPH3
CECR2-005	OTTHUMT00000316220.3	5634	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
CECR2-006	OTTHUMT00000316228.2	1437	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
CECR2-004	OTTHUMT00000340298.2	2144	218aa	OTTHUMP00000208064	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CECR2-003	OTTHUMT00000316227.1	596	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 4 Transcript length: 2,144 bps Translation length: 218 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 04/11/2008)

Alternative symbols

AC004019.11-004

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 17,548,999-17,554,133 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000355219

Curation Method

Manual annotation from Havana