Description
regulatory factor X, 5 (influences HLA class II expression)
Location
Chromosome 3: 94,954,075-94,961,561 forward strand.
About this gene
This gene has 16 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
Rfx5-017 | OTTMUST00000082651.1 | 4333 | 658aa | OTTMUSP00000044332 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS17598 | Q9JL61 | |
Rfx5-009 | OTTMUST00000055675.2 | 2355 | 658aa | OTTMUSP00000026691 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS17598 | Q9JL61 | |
Rfx5-010 | OTTMUST00000055676.1 | 2350 | 658aa | OTTMUSP00000026692 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS17598 | Q9JL61 | |
Rfx5-004 | OTTMUST00000047064.1 | 4450 | 303aa | OTTMUSP00000021261 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q6DI69 | |
Rfx5-016 | OTTMUST00000055682.1 | 4367 | 303aa | OTTMUSP00000026698 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q6DI69 | |
Rfx5-012 | OTTMUST00000055678.2 | 882 | 181aa | OTTMUSP00000026694 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3Z0D4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
Rfx5-014 | OTTMUST00000055680.2 | 565 | 105aa | OTTMUSP00000026696 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3YZK7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
Rfx5-015 | OTTMUST00000055681.2 | 538 | 90aa | OTTMUSP00000026697 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3YTK4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
Rfx5-013 | OTTMUST00000055679.2 | 536 | 95aa | OTTMUSP00000026695 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3YVW1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
Rfx5-005 | OTTMUST00000047065.2 | 486 | 131aa | OTTMUSP00000021262 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K4DI79 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
Rfx5-001 | OTTMUST00000047061.2 | 4014 | 41aa | OTTMUSP00000038518 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | D6RDE5 | |
Rfx5-006 | OTTMUST00000047066.3 | 705 | 41aa | OTTMUSP00000038519 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | D6RDE5 | |
Rfx5-018 | OTTMUST00000082652.1 | 525 | 41aa | OTTMUSP00000044333 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | D6RDE5 | |
Rfx5-007 | OTTMUST00000047067.1 | 346 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
Rfx5-002 | OTTMUST00000047062.1 | 4139 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
Rfx5-008 | OTTMUST00000047068.1 | 680 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |