Mouse
Mus musculus
Annotation progress
Click on a chromosome to browse:
The arrows (
) indicate the approximate positions of the Idd regions annotated in different strains.
Shading indicates the karyotype bands and unannotated regions.
This Release
| Release Date | 7 February 2017 |
| Datafreeze Date | 18 October 2016 |
| As used in | GENCODE M13; Ensembl 88 genebuild |
| Reference Assembly | GRCm38 |
| Reference Strain | C57BL/6J |
| Annotation Method | Manual Annotation |
Example transcript
Example region
Example gene
Information and statistics
Annotation status
Release 68 news
Download our datasets
Go to Ensembl Mouse homepageIDD Regions and Strains
Candidate Insulin dependent diabetes (Idd) regions on chromosomes 1, 3, 4, 6, 11 and 17 have been annotated in both the CL57BL/6J reference strain and one or more of NOD/MrkTac, NOD/ShiLtJ and 129 strains. Vega contains a comparative analysis of these regions in the different strains.
Comparative Analysis
More info...
| Region | Available species / haplotypes / strains | Examples |
|---|---|---|
| MHC | rat, dog, gorilla, chimpanzee, wallaby, pig (Duroc and Large White), mouse (ref. and 2 NOD strains), rat (mixed sex strain), human (ref. and 7 haplotypes) | example |
| IDD | mouse (ref. and NOD strains). | example |
| Autosome | mouse chr 4 and human chr 1; mouse chr 11 and human chr 17 | 1/4 17/11 |
| Allosome | X: mouse, human and pig | example |
| Sample Region | mouse chr 2, human chr 20 and approx 10Mbp of pig chr 17 | example |
