Transcript: Tsen54-001 OTTMUST00000007589.1

Description

tRNA splicing endonuclease 54 homolog (SEN54, S. cerevisiae)

Location

Chromosome 11: 115,814,724-115,823,094 forward strand.

About this transcript

This transcript has 11 exons and is annotated with 9 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000003539 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Tsen54-001	OTTMUST00000007589.1	1979	525aa	OTTMUSP00000003671	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS25648	Q8C2A2
Tsen54-002	OTTMUST00000007590.1	1862	486aa	OTTMUSP00000003672	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Tsen54-007	OTTMUST00000007778.2	963	153aa	OTTMUSP00000038115	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Tsen54-005	OTTMUST00000007593.2	825	275aa	OTTMUSP00000003673	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Tsen54-008	OTTMUST00000073576.2	494	165aa	OTTMUSP00000038114	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Tsen54-003	OTTMUST00000007591.1	858	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Tsen54-004	OTTMUST00000007592.1	803	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Tsen54-006	OTTMUST00000007594.1	522	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 11 Transcript length: 1,979 bps Translation length: 525 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25648

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 30/07/2004)

Alternative symbols

RP23-354K2.5-001

Remarks

0610034P02Rik

Other assemblies

This transcript maps to 115,814,724-115,823,094 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000021134

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Tsen54-001 OTTMUST00000007589.1

Summary

Transcript-based displays