Transcript: Paxbp1-002 OTTMUST00000039068.2

Description

PAX3 and PAX7 binding protein 1

Location

Chromosome 16: 91,014,916-91,044,164 reverse strand.

About this transcript

This transcript has 18 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000016279 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Paxbp1-001	OTTMUST00000039069.3	3973	919aa	OTTMUSP00000017451	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS49908	P58501
Paxbp1-002	OTTMUST00000039068.2	2732	450aa	OTTMUSP00000035757	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6YY19	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Paxbp1-008	OTTMUST00000070229.2	339	36aa	OTTMUSP00000038727	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6YS88	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Paxbp1-007	OTTMUST00000050500.1	1415	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Paxbp1-006	OTTMUST00000039073.1	296	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Paxbp1-003	OTTMUST00000039070.2	1298	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Paxbp1-004	OTTMUST00000039071.1	903	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Paxbp1-005	OTTMUST00000039072.1	546	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 18 Transcript length: 2,732 bps Translation length: 450 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 21/03/2006)

Alternative symbols

RP24-104I20.1-002

Remarks

ortholog of human chromosome 21 open reading frame 66 (C21orf66)

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 91,014,916-91,044,164 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000023698

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Paxbp1-002 OTTMUST00000039068.2

Summary

Transcript-based displays