Transcript: Gin1-007 OTTMUST00000124916.1

Description

gypsy retrotransposon integrase 1

Location

About this transcript

This transcript has 4 exons and is annotated with 2 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Gin1-002	OTTMUST00000050830.1	2494	429aa	OTTMUSP00000023824	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS78662	-
Gin1-001	OTTMUST00000050829.1	2046	518aa	OTTMUSP00000023823	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS35679	Q8K259
Gin1-004	OTTMUST00000050832.1	1037	118aa	OTTMUSP00000023825	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Gin1-003	OTTMUST00000050831.2	1851	80aa	OTTMUSP00000063000	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Gin1-007	OTTMUST00000124916.1	417	61aa	OTTMUSP00000067865	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Gin1-005	OTTMUST00000050833.1	517	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Gin1-006	OTTMUST00000124915.1	2326	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 417 bps Translation length: 61 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 19/02/2014 (Created on 19/02/2014)

Alternative symbols

AC102191.1-007

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 97,777,399-97,785,063 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000189031

Curation Method

Manual annotation from Havana