Transcript: Smyd1-001 OTTMUST00000054509.1

Description

SET and MYND domain containing 1

Location

Chromosome 6: 71,213,940-71,262,281 reverse strand.

About this transcript

This transcript has 10 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000022727 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Smyd1-001	OTTMUST00000054509.1	3361	490aa	OTTMUSP00000026032	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS51805	P97443
Smyd1-002	OTTMUST00000054510.2	3292	477aa	OTTMUSP00000026033	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS20227	Q3UQT9
Smyd1-005	OTTMUST00000097255.1	2064	456aa	OTTMUSP00000054510	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G5E8R7
Smyd1-007	OTTMUST00000097258.1	947	21aa	OTTMUSP00000054513	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G3UXZ0
Smyd1-008	OTTMUST00000097256.1	428	58aa	OTTMUSP00000054511	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G3UZ94	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Smyd1-004	OTTMUST00000054512.2	376	69aa	OTTMUSP00000054512	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q8BMV4
Smyd1-003	OTTMUST00000054511.2	2606	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Smyd1-006	OTTMUST00000097257.1	1756	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-

Summary

Statistics

Exons: 10 Transcript length: 3,361 bps Translation length: 490 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51805

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 30/01/2007)

Alternative symbols

AC115777.1-001

Remarks

downstream ATG

NP_001153599.1

Other assemblies

This transcript maps to 71,213,940-71,262,281 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000074301

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Smyd1-001 OTTMUST00000054509.1

Summary

Transcript-based displays