Transcript: Snx25-005 OTTMUST00000060555.2

Description

sorting nexin 25

Location

Chromosome 8: 46,056,120-46,089,693 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 3 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000024631 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Snx25-003	OTTMUST00000060553.3	3206	840aa	OTTMUSP00000029536	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS22287	Q3ZT31
Snx25-001	OTTMUST00000060551.2	3445	986aa	OTTMUSP00000029534	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E9Q1K0
Snx25-005	OTTMUST00000060555.2	447	149aa	OTTMUSP00000077493	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Snx25-008	OTTMUST00000103311.1	433	33aa	OTTMUSP00000057689	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H3BJE1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Snx25-007	OTTMUST00000103312.1	769	142aa	OTTMUSP00000057690	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	D3Z040
Snx25-006	OTTMUST00000060556.1	641	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Snx25-002	OTTMUST00000060552.3	3275	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Snx25-004	OTTMUST00000060554.2	709	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 447 bps Translation length: 149 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 04/01/2016 (Created on 16/04/2007)

Alternative symbols

AC114558.4-005

Annotation Attributes

dotter confirmed [Definitions]

Remarks

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 46,056,120-46,089,693 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000144244

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Snx25-005 OTTMUST00000060555.2

Summary

Transcript-based displays