Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Location
Chromosome 15: 99,295,087-99,305,965 forward strand.
About this transcript
This transcript has 8 exons and is annotated with 10 domains and features.
Gene
This transcript is a product of gene OTTMUSG00000028170 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | Flags |
|---|---|---|---|---|---|---|---|
| Prpf40b-001 | OTTMUST00000069773.3 | 3308 | 873aa | OTTMUSP00000035488 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS27818 | |
| Prpf40b-006 | OTTMUST00000069778.2 | 3129 | 870aa | OTTMUSP00000035489 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | |
| Prpf40b-011 | OTTMUST00000085250.1 | 3047 | 857aa | OTTMUSP00000046034 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | |
| Prpf40b-010 | OTTMUST00000085249.2 | 2619 | 852aa | OTTMUSP00000046033 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Prpf40b-008 | OTTMUST00000069780.1 | 892 | 189aa | OTTMUSP00000035491 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Prpf40b-007 | OTTMUST00000069779.1 | 891 | 257aa | OTTMUSP00000035490 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Prpf40b-015 | OTTMUST00000085254.1 | 780 | 86aa | OTTMUSP00000046037 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Prpf40b-012 | OTTMUST00000085251.2 | 658 | 136aa | OTTMUSP00000046035 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Prpf40b-004 | OTTMUST00000069776.1 | 3334 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | |
| Prpf40b-013 | OTTMUST00000085252.1 | 1000 | 92aa | OTTMUSP00000046036 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | |
| Prpf40b-003 | OTTMUST00000069775.3 | 4065 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | |
| Prpf40b-005 | OTTMUST00000069777.1 | 2993 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | |
| Prpf40b-002 | OTTMUST00000069774.1 | 2740 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | |
| Prpf40b-016 | OTTMUST00000085255.1 | 906 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | |
| Prpf40b-014 | OTTMUST00000085253.1 | 818 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | |
| Prpf40b-009 | OTTMUST00000069781.1 | 590 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - |
