Transcript: Pcdh1-002 OTTMUST00000084083.3

Description

protocadherin 1

Location

Chromosome 18: 38,188,890-38,203,163 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 55 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000033463 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Pcdh1-001	OTTMUST00000084082.1	3902	1038aa	OTTMUSP00000045257	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29197	Q8CFX3
Pcdh1-005	OTTMUST00000084086.1	3880	1038aa	OTTMUSP00000045260	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29197	Q8CFX3
Pcdh1-004	OTTMUST00000084085.3	5416	360aa	OTTMUSP00000045259	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E0CXD4
Pcdh1-002	OTTMUST00000084083.3	3889	1077aa	OTTMUSP00000045258	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F7BJK1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Pcdh1-007	OTTMUST00000129117.2	434	60aa	OTTMUSP00000069400	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0A6YY88	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Pcdh1-006	OTTMUST00000129116.3	234	45aa	OTTMUSP00000069399	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0A6YX79	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Pcdh1-003	OTTMUST00000084084.1	996	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-

Summary

Statistics

Exons: 4 Transcript length: 3,889 bps Translation length: 1,077 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 04/06/2014 (Created on 26/08/2008)

Alternative symbols

AC133646.1-002

Annotation Attributes

not organism-supported [Definitions]

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 38,188,890-38,203,163 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000161701

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Pcdh1-002 OTTMUST00000084083.3

Summary

Transcript-based displays