Transcript: Fam78b-002 OTTMUST00000085671.1

Description

family with sequence similarity 78, member B

Location

Chromosome 1: 167,001,589-167,091,009 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 2 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000033956 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Fam78b-001	OTTMUST00000085670.3	2951	261aa	OTTMUSP00000046302	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS35764	Q8BQN5
Fam78b-006	OTTMUST00000128302.1	2225	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Fam78b-005	OTTMUST00000128303.1	1960	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Fam78b-004	OTTMUST00000085673.1	2426	261aa	OTTMUSP00000046305	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	CCDS35764	Q8BQN5
Fam78b-002	OTTMUST00000085671.1	4203	254aa	OTTMUSP00000046303	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Fam78b-003	OTTMUST00000085672.1	2245	257aa	OTTMUSP00000046304	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Summary

Statistics

Exons: 3 Transcript length: 4,203 bps Translation length: 254 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 14/05/2014 (Created on 04/12/2008)

Alternative symbols

AC158767.1-002

Remarks

alternative 3' UTR

NAGNAG splice site

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 167,001,589-167,091,009 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000128373

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Fam78b-002 OTTMUST00000085671.1

Summary

Transcript-based displays