Transcript: Sned1-001 OTTMUST00000093349.1

Description

sushi, nidogen and EGF-like domains 1

Location

Chromosome 1: 93,235,841-93,301,065 forward strand.

About this transcript

This transcript has 31 exons and is annotated with 155 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000036435 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sned1-001	OTTMUST00000093349.1	9147	1403aa	OTTMUSP00000051759	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS35670	A0A0R4J0N0
Sned1-004	OTTMUST00000093352.2	1719	573aa	OTTMUSP00000051760	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6V5H4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Sned1-003	OTTMUST00000093348.1	4403	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Sned1-006	OTTMUST00000093351.1	753	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Sned1-002	OTTMUST00000093350.1	3757	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sned1-005	OTTMUST00000093353.1	679	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sned1-007	OTTMUST00000093354.1	439	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 31 Transcript length: 9,147 bps Translation length: 1,403 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35670

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 17/06/2010)

Alternative symbols

RP23-110B5.1-001

Remarks

NP_766051

Other assemblies

This transcript maps to 93,235,841-93,301,065 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000062202

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Sned1-001 OTTMUST00000093349.1

Summary

Transcript-based displays