Transcript: Chd1-006 OTTMUST00000098207.1

Description

chromodomain helicase DNA binding protein 1

Location

About this transcript

This transcript has 6 exons.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Chd1-001	OTTMUST00000098202.2	7916	1711aa	OTTMUSP00000055141	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS28416	P40201
Chd1-003	OTTMUST00000098203.1	4211	1081aa	OTTMUSP00000055142	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q8C7Q2
Chd1-002	OTTMUST00000098205.1	1812	516aa	OTTMUSP00000055143	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	G3V014	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Chd1-005	OTTMUST00000098208.1	4217	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Chd1-006	OTTMUST00000098207.1	660	164aa	OTTMUSP00000055144	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Chd1-004	OTTMUST00000098204.1	1372	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 6 Transcript length: 660 bps Translation length: 164 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 04/05/2011)

Alternative symbols

RP24-371L2.1-006

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 15,756,765-15,761,335 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000173040

Curation Method

Manual annotation from Havana