Transcript: Ppp6r1-004 OTTMUST00000143536.1

Description

protein phosphatase 6, regulatory subunit 1

Location

About this transcript

This transcript has 6 exons and is annotated with 4 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Ppp6r1-001	OTTMUST00000143528.2	3862	856aa	OTTMUSP00000074814	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS39737	Q7TSI3
Ppp6r1-005	OTTMUST00000143538.1	773	154aa	OTTMUSP00000074821	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Ppp6r1-003	OTTMUST00000143537.2	764	253aa	OTTMUSP00000075271	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Ppp6r1-004	OTTMUST00000143536.1	710	146aa	OTTMUSP00000074820	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Ppp6r1-002	OTTMUST00000143535.1	2731	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Ppp6r1-006	OTTMUST00000143540.1	673	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 710 bps Translation length: 146 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 08/07/2015 (Created on 08/07/2015)

Alternative symbols

RP23-179K11.7-004

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 4,641,296-4,643,284 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000206966

Curation Method

Manual annotation from Havana