Transcript: Nphs1-004 OTTMUST00000077113.1

Description

nephrosis 1 homolog, nephrin (human)

Location

About this transcript

This transcript has 9 exons.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Nphs1-001	OTTMUST00000076995.2	4608	1256aa	OTTMUSP00000040603	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS39884	Q9QZS7
Nphs1-007	OTTMUST00000145715.1	3877	1242aa	OTTMUSP00000075916	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Nphs1-002	OTTMUST00000077111.1	4395	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Nphs1-004	OTTMUST00000077113.1	752	72aa	OTTMUSP00000040696	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Nphs1-006	OTTMUST00000077115.2	1987	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nphs1-005	OTTMUST00000077114.1	664	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 9 Transcript length: 752 bps Translation length: 72 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/03/2012 (Created on 30/01/2008)

Alternative symbols

AC167970.7-004

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 30,477,865-30,486,881 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000149086

Curation Method

Manual annotation from Havana