Description
collagen, type XVI, alpha 1
Location
Chromosome 1: 31,652,247-31,704,319 reverse strand.
VEGA68:CM000663.2
About this gene
This gene has 18 transcripts (splice variants), 20 orthologues and 19 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| COL16A1-001 | OTTHUMT00000011057.2 | 5736 | 1604aa | OTTHUMP00000003955 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS41297 | Q07092 | |
| COL16A1-005 | OTTHUMT00000091413.1 | 3643 | 966aa | OTTHUMP00000035638 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| COL16A1-015 | OTTHUMT00000091414.2 | 924 | 308aa | OTTHUMP00000194900 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| COL16A1-013 | OTTHUMT00000011069.3 | 706 | 235aa | OTTHUMP00000194899 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| COL16A1-017 | OTTHUMT00000091416.2 | 672 | 224aa | OTTHUMP00000194901 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| COL16A1-002 | OTTHUMT00000011058.19 | 607 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| COL16A1-003 | OTTHUMT00000011059.1 | 852 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-004 | OTTHUMT00000011071.2 | 797 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-014 | OTTHUMT00000011070.1 | 676 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-012 | OTTHUMT00000011068.1 | 620 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-019 | OTTHUMT00000383018.1 | 581 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-018 | OTTHUMT00000383019.1 | 534 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-007 | OTTHUMT00000011063.1 | 254 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL16A1-010 | OTTHUMT00000011066.3 | 2854 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| COL16A1-006 | OTTHUMT00000011062.2 | 2423 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| COL16A1-009 | OTTHUMT00000011065.1 | 826 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| COL16A1-011 | OTTHUMT00000011067.1 | 740 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| COL16A1-008 | OTTHUMT00000011064.1 | 676 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
