PigVega Home


Sus scrofa

Annotation progress

Click on a chromosome to browse:

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 7-LW chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome X chromosome X-WTSI chromosome Y-WTSI chromosome U_Y Karyotype selector

Shading indicates unannotated regions

This Release

Release Date 25 August 2015
Datafreeze Date 8 June 2015
As used in Ensembl 69 genebuild
Assembly Sscrofa10.2
Source Swine Genome Sequencing Consortium (SGSC)
Annotation Method Havana and Community Manual Annotation


Vega contains annotation on three other assemblies:
  • chromosome 7-LW is a small part of chromsome 7 containing the MHC region of the Large White breed.
  • chromosomes X-WTSI and Y-WTSI are alternative assemblies of the DUROC allosomes. Chromosome U_Y represents clones known to be part of the Y-WTSI assembly but which are currently unplaced.

Comparative Analysis

Region Available species / haplotypes / strains Examples
MHC dog, chimpanzee, gorilla, human (ref. plus 7 haplotypes), mouse (ref. plus 2 NOD strains), pig (Duroc & Large White), tasmanian devil, wallaby example
LRC pig, gorilla and human (ref. and 8 haplotypes). example

Community annotation

Vega pig contains manual annotation both from Havana and from the Immune Response Annotation Group (IRAG) community annotation initiative.

About this species