Description
spectrin repeat containing, nuclear envelope 1
Synonyms
MYNE1, enaptin, SCAR8, 8B, SYNE-1B, CPG2, KIAA0796, dJ45H2.2, Nesprin-1, ARCA1, Nesp1
Location
Chromosome 6: 152,121,684-152,637,801 reverse strand.
VEGA68:CM000668.2
About this gene
This gene has 38 transcripts (splice variants), 15 orthologues and 14 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SYNE1-001 | OTTHUMT00000334755.2 | 27748 | 8797aa | OTTHUMP00000205471 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS5236 | Q8NF91 | |
| SYNE1-002 | OTTHUMT00000042732.5 | 27436 | 8749aa | OTTHUMP00000017440 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS5235 | A0A0C4DG40 | |
| SYNE1-009 | OTTHUMT00000042745.2 | 7165 | 1433aa | OTTHUMP00000017445 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5GXQ8 | |
| SYNE1-006 | OTTHUMT00000042734.3 | 5837 | 1654aa | OTTHUMP00000237430 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0Y325 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNE1-010 | OTTHUMT00000042747.2 | 5189 | 1725aa | OTTHUMP00000017447 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SYNE1-033 | OTTHUMT00000397276.1 | 5022 | 1355aa | OTTHUMP00000237470 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0Y326 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNE1-029 | OTTHUMT00000397281.1 | 4860 | 1443aa | OTTHUMP00000237472 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SYNE1-005 | OTTHUMT00000042733.2 | 3768 | 952aa | OTTHUMP00000017441 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q5JV20 | |
| SYNE1-027 | OTTHUMT00000397251.1 | 3154 | 975aa | OTTHUMP00000237449 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F8WAI0 | |
| SYNE1-030 | OTTHUMT00000397283.2 | 2850 | 615aa | OTTHUMP00000237473 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5GYQ7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNE1-021 | OTTHUMT00000334764.2 | 2610 | 754aa | OTTHUMP00000237452 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5H4Q0 | |
| SYNE1-022 | OTTHUMT00000042746.2 | 1907 | 612aa | OTTHUMP00000237450 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5H422 | |
| SYNE1-012 | OTTHUMT00000042738.3 | 1546 | 510aa | OTTHUMP00000205473 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNE1-036 | OTTHUMT00000397279.2 | 776 | 242aa | OTTHUMP00000237471 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5H6R8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNE1-037 | OTTHUMT00000397295.2 | 647 | 195aa | OTTHUMP00000237474 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5GZ83 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNE1-013 | OTTHUMT00000334756.2 | 630 | 207aa | OTTHUMP00000237437 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNE1-032 | OTTHUMT00000397277.1 | 1834 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SYNE1-023 | OTTHUMT00000334765.2 | 1798 | 62aa | OTTHUMP00000237451 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNE1-004 | OTTHUMT00000042730.3 | 3798 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-028 | OTTHUMT00000397250.2 | 3664 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-034 | OTTHUMT00000397278.1 | 3003 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-031 | OTTHUMT00000397282.1 | 1388 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-020 | OTTHUMT00000334763.2 | 585 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-025 | OTTHUMT00000334767.1 | 582 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-024 | OTTHUMT00000334766.1 | 578 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNE1-011 | OTTHUMT00000042729.3 | 10742 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-015 | OTTHUMT00000334758.4 | 10634 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-014 | OTTHUMT00000334757.2 | 10075 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-017 | OTTHUMT00000334760.1 | 7780 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-018 | OTTHUMT00000334761.1 | 7229 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-003 | OTTHUMT00000042731.3 | 5707 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-016 | OTTHUMT00000334759.1 | 1891 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-019 | OTTHUMT00000334762.3 | 688 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-026 | OTTHUMT00000334768.2 | 581 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-035 | OTTHUMT00000397280.1 | 561 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-038 | OTTHUMT00000397294.1 | 526 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-007 | OTTHUMT00000042735.2 | 525 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SYNE1-008 | OTTHUMT00000042736.2 | 414 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
