Description
RNA binding motif protein 39
Synonyms
CC1.3, CAPER, fSAP59, HCC1, CAPERalpha
Location
Chromosome 20: 35,701,347-35,742,312 reverse strand.
VEGA68:CM000682.2
About this gene
This gene has 45 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| RBM39-001 | OTTHUMT00000078930.4 | 2831 | 524aa | OTTHUMP00000030794 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS13265 | - | |
| RBM39-002 | OTTHUMT00000078931.3 | 2488 | 530aa | OTTHUMP00000030795 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS13266 | Q14498 | |
| RBM39-015 | OTTHUMT00000127144.2 | 2421 | 508aa | OTTHUMP00000062714 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS56186 | - | |
| RBM39-020 | OTTHUMT00000127149.1 | 1026 | 231aa | OTTHUMP00000062716 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q5QP23 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| RBM39-035 | OTTHUMT00000128143.1 | 1008 | 336aa | OTTHUMP00000063388 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0Y4X3 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| RBM39-039 | OTTHUMT00000315983.3 | 840 | 86aa | OTTHUMP00000196098 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| RBM39-018 | OTTHUMT00000127147.2 | 716 | 193aa | OTTHUMP00000062715 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q5QP22 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| RBM39-013 | OTTHUMT00000127142.2 | 612 | 95aa | OTTHUMP00000196099 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| RBM39-006 | OTTHUMT00000126526.2 | 2883 | 40aa | OTTHUMP00000198912 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-008 | OTTHUMT00000126528.4 | 2792 | 423aa | OTTHUMP00000196683 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3XAC6 | |
| RBM39-005 | OTTHUMT00000126525.4 | 2149 | 47aa | OTTHUMP00000198911 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-007 | OTTHUMT00000126527.4 | 2124 | 40aa | OTTHUMP00000198913 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-012 | OTTHUMT00000126532.3 | 1068 | 40aa | OTTHUMP00000198914 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-017 | OTTHUMT00000127146.2 | 1018 | 40aa | OTTHUMP00000198916 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-036 | OTTHUMT00000156178.5 | 871 | 245aa | OTTHUMP00000281523 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A0U1RQH7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| RBM39-029 | OTTHUMT00000127158.2 | 754 | 59aa | OTTHUMP00000275280 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| RBM39-047 | OTTHUMT00000475189.2 | 686 | 163aa | OTTHUMP00000281522 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A0U1RQW2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| RBM39-045 | OTTHUMT00000316944.3 | 611 | 39aa | OTTHUMP00000196682 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-024 | OTTHUMT00000127153.2 | 594 | 62aa | OTTHUMP00000198918 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-043 | OTTHUMT00000316942.3 | 577 | 40aa | OTTHUMP00000196680 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-021 | OTTHUMT00000127150.4 | 526 | 23aa | OTTHUMP00000199595 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| RBM39-019 | OTTHUMT00000127148.2 | 441 | 40aa | OTTHUMP00000198917 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-044 | OTTHUMT00000316943.4 | 432 | 40aa | OTTHUMP00000196681 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| RBM39-003 | OTTHUMT00000078932.4 | 869 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RBM39-040 | OTTHUMT00000315984.1 | 704 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RBM39-016 | OTTHUMT00000127145.3 | 644 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RBM39-037 | OTTHUMT00000157363.2 | 444 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RBM39-027 | OTTHUMT00000127156.1 | 384 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RBM39-025 | OTTHUMT00000127154.1 | 370 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| RBM39-048 | OTTHUMT00000491373.1 | 5914 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-004 | OTTHUMT00000126524.4 | 4580 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-009 | OTTHUMT00000126529.3 | 2415 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-010 | OTTHUMT00000126530.1 | 2316 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-011 | OTTHUMT00000126531.1 | 1737 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-026 | OTTHUMT00000127155.1 | 949 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-014 | OTTHUMT00000127143.1 | 861 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-031 | OTTHUMT00000127160.1 | 825 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-032 | OTTHUMT00000127161.1 | 759 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-022 | OTTHUMT00000127151.1 | 687 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-033 | OTTHUMT00000127162.1 | 632 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-042 | OTTHUMT00000316941.1 | 567 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-028 | OTTHUMT00000127157.1 | 555 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-030 | OTTHUMT00000127159.1 | 549 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-041 | OTTHUMT00000315985.1 | 549 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| RBM39-034 | OTTHUMT00000127163.1 | 436 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
