Description
tripartite motif-containing 5
Synonyms
RNF88, TRIM5alpha
Location
Chromosome 11: 5,663,557-5,938,619 reverse strand.
VEGA68:CM000673.2
About this gene
This gene has 13 transcripts (splice variants), 62 orthologues and 51 paralogues.
Transcripts
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
TRIM5-004 | OTTHUMT00000143363.2 | 3170 | 347aa | OTTHUMP00000069813 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS31394 | - | |
TRIM5-001 | OTTHUMT00000143360.3 | 2991 | 493aa | OTTHUMP00000069811 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS31393 | Q9C035 | |
TRIM5-003 | OTTHUMT00000143362.2 | 2290 | 326aa | OTTHUMP00000069812 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS31392 | - | |
TRIM5-012 | OTTHUMT00000143890.4 | 1054 | 209aa | OTTHUMP00000196023 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E7EQQ5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
TRIM5-009 | OTTHUMT00000143368.3 | 767 | 187aa | OTTHUMP00000069814 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C134 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
TRIM5-013 | OTTHUMT00000315827.2 | 607 | 72aa | OTTHUMP00000196022 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JWN8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
TRIM5-002 | OTTHUMT00000143361.3 | 4268 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
TRIM5-006 | OTTHUMT00000143365.3 | 752 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
TRIM5-005 | OTTHUMT00000143364.4 | 2759 | 271aa | OTTHUMP00000197100 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
TRIM5-008 | OTTHUMT00000143367.3 | 918 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
TRIM5-011 | OTTHUMT00000143370.2 | 662 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
TRIM5-010 | OTTHUMT00000143369.2 | 602 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
TRIM5-007 | OTTHUMT00000143366.1 | 756 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |