Description
high-mobility group 20A
Synonyms
FLJ10739, HMGXB1, HMGX1
Location
Chromosome 15: 77,420,412-77,485,607 forward strand.
VEGA68:CM000677.2
About this gene
This gene has 15 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| HMG20A-002 | OTTHUMT00000419512.2 | 4112 | 347aa | OTTHUMP00000248879 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10295 | Q9NP66 | |
| HMG20A-001 | OTTHUMT00000289794.3 | 4046 | 347aa | OTTHUMP00000184900 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10295 | Q9NP66 | |
| HMG20A-009 | OTTHUMT00000419524.1 | 644 | 118aa | OTTHUMP00000248883 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YKL0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| HMG20A-007 | OTTHUMT00000419520.2 | 631 | 100aa | OTTHUMP00000248881 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20A-013 | OTTHUMT00000419530.2 | 559 | 162aa | OTTHUMP00000248887 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20A-015 | OTTHUMT00000419529.2 | 558 | 156aa | OTTHUMP00000248886 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20A-012 | OTTHUMT00000419527.3 | 494 | 29aa | OTTHUMP00000248884 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20A-011 | OTTHUMT00000419521.3 | 479 | 26aa | OTTHUMP00000248882 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| HMG20A-005 | OTTHUMT00000419516.2 | 1414 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HMG20A-003 | OTTHUMT00000419514.1 | 1375 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HMG20A-004 | OTTHUMT00000419515.1 | 974 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HMG20A-014 | OTTHUMT00000419528.1 | 563 | 84aa | OTTHUMP00000248885 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HMG20A-006 | OTTHUMT00000419525.1 | 3558 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20A-008 | OTTHUMT00000419523.1 | 981 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HMG20A-010 | OTTHUMT00000419522.1 | 747 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
