Description
LIM and calponin homology domains 1
Synonyms
LMO7B, LIMCH1A, DKFZP686A01247
Location
Chromosome 4: 41,359,607-41,700,044 forward strand.
VEGA68:CM000666.2
About this gene
This gene has 24 transcripts (splice variants), 3 orthologues and 2 paralogues.
Transcripts
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
LIMCH1-001 | OTTHUMT00000361249.2 | 6165 | 1083aa | OTTHUMP00000218521 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33977 | Q9UPQ0 | |
LIMCH1-017 | OTTHUMT00000361478.2 | 5740 | 902aa | OTTHUMP00000218618 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS47047 | - | |
LIMCH1-018 | OTTHUMT00000361479.1 | 5705 | 890aa | OTTHUMP00000218619 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54765 | - | |
LIMCH1-013 | OTTHUMT00000361260.3 | 5467 | 1467aa | OTTHUMP00000218530 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS82919 | G5EA03 | |
LIMCH1-003 | OTTHUMT00000361251.1 | 5129 | 910aa | OTTHUMP00000218523 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS75121 | - | |
LIMCH1-007 | OTTHUMT00000361255.1 | 5071 | 1069aa | OTTHUMP00000218527 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS75119 | - | |
LIMCH1-005 | OTTHUMT00000361253.1 | 5057 | 1057aa | OTTHUMP00000218525 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54763 | - | |
LIMCH1-002 | OTTHUMT00000361250.2 | 5054 | 1056aa | OTTHUMP00000218522 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54764 | - | |
LIMCH1-015 | OTTHUMT00000361476.1 | 3474 | 916aa | OTTHUMP00000218616 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS82920 | E9PDJ9 | |
LIMCH1-006 | OTTHUMT00000361254.2 | 4792 | 980aa | OTTHUMP00000218526 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RD46 | |
LIMCH1-014 | OTTHUMT00000361261.1 | 3543 | 897aa | OTTHUMP00000218531 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E7EPK0 | |
LIMCH1-012 | OTTHUMT00000361259.1 | 3439 | 897aa | OTTHUMP00000218529 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
LIMCH1-019 | OTTHUMT00000361480.2 | 3051 | 917aa | OTTHUMP00000218620 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0Y8P3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
LIMCH1-004 | OTTHUMT00000361252.1 | 1570 | 153aa | OTTHUMP00000218524 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
LIMCH1-016 | OTTHUMT00000361477.1 | 1506 | 160aa | OTTHUMP00000218617 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
LIMCH1-010 | OTTHUMT00000361257.2 | 789 | 126aa | OTTHUMP00000218528 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LIMCH1-026 | OTTHUMT00000363234.2 | 551 | 26aa | OTTHUMP00000219472 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LIMCH1-009 | OTTHUMT00000361256.2 | 2092 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
LIMCH1-020 | OTTHUMT00000361481.1 | 1706 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
LIMCH1-021 | OTTHUMT00000361482.1 | 1129 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
LIMCH1-024 | OTTHUMT00000361485.1 | 540 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
LIMCH1-022 | OTTHUMT00000361483.1 | 490 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
LIMCH1-023 | OTTHUMT00000361484.1 | 473 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
LIMCH1-025 | OTTHUMT00000361486.1 | 437 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - |