Description
COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)
Synonyms
CSN7A
Location
Chromosome 12: 6,723,741-6,731,875 forward strand.
VEGA68:CM000674.2
About this gene
This gene has 23 transcripts (splice variants) and 2 orthologues.
Transcripts
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
COPS7A-001 | OTTHUMT00000402740.1 | 2127 | 275aa | OTTHUMP00000240328 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8558 | Q9UBW8 | |
COPS7A-002 | OTTHUMT00000402757.1 | 2034 | 275aa | OTTHUMP00000240342 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8558 | Q9UBW8 | |
COPS7A-004 | OTTHUMT00000402748.1 | 1832 | 275aa | OTTHUMP00000240333 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8558 | Q9UBW8 | |
COPS7A-006 | OTTHUMT00000402747.1 | 1721 | 275aa | OTTHUMP00000240332 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8558 | Q9UBW8 | |
COPS7A-003 | OTTHUMT00000402762.1 | 1707 | 275aa | OTTHUMP00000240345 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8558 | Q9UBW8 | |
COPS7A-015 | OTTHUMT00000402750.1 | 1610 | 262aa | OTTHUMP00000240335 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5H248 | |
COPS7A-027 | OTTHUMT00000402761.2 | 940 | 192aa | OTTHUMP00000240344 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5H7C6 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
COPS7A-022 | OTTHUMT00000402763.2 | 754 | 212aa | OTTHUMP00000240346 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5GYF7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
COPS7A-024 | OTTHUMT00000402756.2 | 502 | 125aa | OTTHUMP00000240341 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5H4U8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
COPS7A-012 | OTTHUMT00000402742.1 | 1560 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
COPS7A-013 | OTTHUMT00000402744.1 | 1420 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
COPS7A-005 | OTTHUMT00000402753.1 | 1728 | 62aa | OTTHUMP00000240338 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-016 | OTTHUMT00000402743.1 | 1718 | 62aa | OTTHUMP00000240330 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-021 | OTTHUMT00000402755.1 | 898 | 62aa | OTTHUMP00000240340 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-020 | OTTHUMT00000402759.2 | 871 | 62aa | OTTHUMP00000272171 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-023 | OTTHUMT00000402764.2 | 802 | 62aa | OTTHUMP00000240347 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-009 | OTTHUMT00000402760.1 | 744 | 71aa | OTTHUMP00000240343 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-025 | OTTHUMT00000402751.1 | 569 | 62aa | OTTHUMP00000240336 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-026 | OTTHUMT00000402749.1 | 552 | 62aa | OTTHUMP00000240334 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-008 | OTTHUMT00000402765.1 | 538 | 60aa | OTTHUMP00000240348 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-007 | OTTHUMT00000402752.1 | 534 | 56aa | OTTHUMP00000240337 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
COPS7A-011 | OTTHUMT00000402745.1 | 658 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
COPS7A-010 | OTTHUMT00000402766.1 | 556 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |