Description
vacuolar protein sorting 39 homolog (S. cerevisiae)
Synonyms
KIAA0770, VAM6
Location
Chromosome 15: 42,158,701-42,208,316 reverse strand.
VEGA68:CM000677.2
About this gene
This gene has 14 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| VPS39-001 | OTTHUMT00000252861.1 | 4844 | 875aa | OTTHUMP00000161027 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10083 | A0A024R9L9 | |
| VPS39-002 | OTTHUMT00000420472.2 | 2661 | 886aa | OTTHUMP00000249335 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS73710 | Q96JC1 | |
| VPS39-013 | OTTHUMT00000420471.1 | 629 | 47aa | OTTHUMP00000249334 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| VPS39-004 | OTTHUMT00000420481.1 | 593 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS39-010 | OTTHUMT00000420477.1 | 587 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS39-003 | OTTHUMT00000420470.1 | 4160 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-014 | OTTHUMT00000473844.1 | 2835 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-005 | OTTHUMT00000420480.1 | 842 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-006 | OTTHUMT00000420478.1 | 791 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-012 | OTTHUMT00000420473.1 | 581 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-008 | OTTHUMT00000420476.1 | 545 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-009 | OTTHUMT00000420475.1 | 537 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-011 | OTTHUMT00000420474.1 | 526 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS39-007 | OTTHUMT00000420479.1 | 337 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
