Description
TNF receptor-associated factor 4
Synonyms
CART1, RNF83, MLN62
Location
Chromosome 17: 28,743,984-28,750,958 forward strand.
VEGA68:CM000679.2
About this gene
This gene has 19 transcripts (splice variants), 5 orthologues and 3 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| TRAF4-001 | OTTHUMT00000255944.3 | 2923 | 470aa | OTTHUMP00000163519 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11243 | A0A024QZ59 | |
| TRAF4-009 | OTTHUMT00000446490.1 | 1456 | 437aa | OTTHUMP00000261510 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F6SA91 | |
| TRAF4-016 | OTTHUMT00000446495.3 | 825 | 48aa | OTTHUMP00000264384 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K7EJG7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TRAF4-010 | OTTHUMT00000446493.1 | 683 | 195aa | OTTHUMP00000261511 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A0C4DFM9 | |
| TRAF4-002 | OTTHUMT00000255945.2 | 631 | 182aa | OTTHUMP00000163520 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JJ10 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TRAF4-004 | OTTHUMT00000255947.2 | 585 | 90aa | OTTHUMP00000264385 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K7ER49 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TRAF4-012 | OTTHUMT00000446492.1 | 599 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TRAF4-013 | OTTHUMT00000446494.1 | 597 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TRAF4-011 | OTTHUMT00000446491.1 | 483 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TRAF4-020 | OTTHUMT00000448534.1 | 789 | 53aa | OTTHUMP00000262743 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | K7EM06 | |
| TRAF4-005 | OTTHUMT00000255948.2 | 718 | 49aa | OTTHUMP00000261509 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | J3QR87 | |
| TRAF4-019 | OTTHUMT00000446812.1 | 672 | 112aa | OTTHUMP00000261679 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | J9JIG0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TRAF4-003 | OTTHUMT00000255946.2 | 544 | 92aa | OTTHUMP00000261512 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TRAF4-007 | OTTHUMT00000255950.2 | 788 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TRAF4-008 | OTTHUMT00000255951.1 | 787 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TRAF4-014 | OTTHUMT00000446489.1 | 748 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TRAF4-006 | OTTHUMT00000255949.2 | 702 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TRAF4-017 | OTTHUMT00000446496.1 | 484 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TRAF4-018 | OTTHUMT00000446497.1 | 449 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
