Description
La ribonucleoprotein domain family, member 7
Synonyms
HDCMA18P, PIP7S, DKFZP564K112
Location
Chromosome 4: 112,636,964-112,657,592 forward strand.
VEGA68:CM000666.2
About this gene
This gene has 15 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| LARP7-002 | OTTHUMT00000363891.1 | 2332 | 589aa | OTTHUMP00000219762 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58924 | - | |
| LARP7-001 | OTTHUMT00000256417.2 | 2286 | 582aa | OTTHUMP00000163828 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS3701 | Q4G0J3 | |
| LARP7-004 | OTTHUMT00000365300.2 | 1047 | 299aa | OTTHUMP00000220374 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RFF0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| LARP7-013 | OTTHUMT00000365309.2 | 1003 | 334aa | OTTHUMP00000220380 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YA82 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| LARP7-009 | OTTHUMT00000365305.2 | 753 | 129aa | OTTHUMP00000220377 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RAF3 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| LARP7-006 | OTTHUMT00000365302.2 | 579 | 119aa | OTTHUMP00000220375 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RF49 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| LARP7-011 | OTTHUMT00000365307.2 | 528 | 155aa | OTTHUMP00000220379 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6R9Z6 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| LARP7-005 | OTTHUMT00000365301.1 | 1437 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LARP7-003 | OTTHUMT00000363892.1 | 2020 | 45aa | OTTHUMP00000219763 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| LARP7-010 | OTTHUMT00000365306.1 | 556 | 101aa | OTTHUMP00000220378 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| LARP7-008 | OTTHUMT00000365304.1 | 477 | 45aa | OTTHUMP00000220376 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| LARP7-015 | OTTHUMT00000365311.1 | 494 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| LARP7-012 | OTTHUMT00000365308.1 | 278 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| LARP7-014 | OTTHUMT00000365310.1 | 834 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LARP7-007 | OTTHUMT00000365303.1 | 424 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
