Description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Synonyms
HHARP, HARP
Location
Chromosome 2: 216,412,414-216,483,053 forward strand.
VEGA68:CM000664.2
About this gene
This gene has 13 transcripts (splice variants), 13 orthologues and 12 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SMARCAL1-001 | OTTHUMT00000256671.2 | 3271 | 954aa | OTTHUMP00000164057 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS2403 | Q9NZC9 | |
| SMARCAL1-003 | OTTHUMT00000337333.1 | 3056 | 954aa | OTTHUMP00000206801 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS2403 | Q9NZC9 | |
| SMARCAL1-002 | OTTHUMT00000337332.1 | 2431 | 796aa | OTTHUMP00000206800 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7BYI2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMARCAL1-010 | OTTHUMT00000337340.2 | 977 | 325aa | OTTHUMP00000206807 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C051 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| SMARCAL1-004 | OTTHUMT00000337334.2 | 722 | 145aa | OTTHUMP00000206802 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMARCAL1-006 | OTTHUMT00000337336.2 | 711 | 130aa | OTTHUMP00000206804 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMARCAL1-007 | OTTHUMT00000337337.2 | 544 | 92aa | OTTHUMP00000206805 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMARCAL1-009 | OTTHUMT00000337339.2 | 538 | 141aa | OTTHUMP00000206806 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMARCAL1-012 | OTTHUMT00000337342.2 | 484 | 161aa | OTTHUMP00000206808 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C1I3 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| SMARCAL1-005 | OTTHUMT00000337335.2 | 310 | 19aa | OTTHUMP00000206803 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMARCAL1-011 | OTTHUMT00000337341.1 | 633 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMARCAL1-013 | OTTHUMT00000337343.1 | 793 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMARCAL1-008 | OTTHUMT00000337338.1 | 542 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
