Description
nuclear receptor subfamily 1, group H, member 3
Synonyms
LXR-a, RLD-1
Location
Chromosome 11: 47,248,300-47,268,845 forward strand.
VEGA68:CM000673.2
About this gene
This gene has 35 transcripts (splice variants), 32 orthologues and 31 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| NR1H3-001 | OTTHUMT00000319214.3 | 2731 | 447aa | OTTHUMP00000198037 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS7929 | Q13133 | |
| NR1H3-030 | OTTHUMT00000391718.1 | 1637 | 447aa | OTTHUMP00000234328 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS7929 | Q13133 | |
| NR1H3-031 | OTTHUMT00000391716.1 | 1501 | 402aa | OTTHUMP00000234325 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS44585 | - | |
| NR1H3-006 | OTTHUMT00000319219.1 | 1480 | 387aa | OTTHUMP00000198041 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS44584 | - | |
| NR1H3-002 | OTTHUMT00000319215.1 | 1330 | 387aa | OTTHUMP00000198038 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS44584 | - | |
| NR1H3-023 | OTTHUMT00000319236.2 | 1704 | 466aa | OTTHUMP00000234326 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PLL4 | |
| NR1H3-003 | OTTHUMT00000319216.1 | 1352 | 342aa | OTTHUMP00000198039 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | B5MBY7 | |
| NR1H3-032 | OTTHUMT00000391721.1 | 1065 | 296aa | OTTHUMP00000234330 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PID2 | |
| NR1H3-016 | OTTHUMT00000319229.2 | 911 | 212aa | OTTHUMP00000198048 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JBS2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-013 | OTTHUMT00000319226.2 | 825 | 205aa | OTTHUMP00000198046 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JCS0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-007 | OTTHUMT00000319220.2 | 802 | 202aa | OTTHUMP00000198042 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JJ16 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-010 | OTTHUMT00000319223.2 | 784 | 193aa | OTTHUMP00000198043 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9J4R0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-037 | OTTHUMT00000395634.2 | 667 | 167aa | OTTHUMP00000236483 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PPA1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-012 | OTTHUMT00000319225.2 | 574 | 134aa | OTTHUMP00000198045 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9J2C8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-011 | OTTHUMT00000319224.6 | 552 | 77aa | OTTHUMP00000198044 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-017 | OTTHUMT00000319230.2 | 440 | 68aa | OTTHUMP00000198049 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NR1H3-027 | OTTHUMT00000391720.1 | 1064 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| NR1H3-019 | OTTHUMT00000319232.1 | 780 | 114aa | OTTHUMP00000198050 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NR1H3-014 | OTTHUMT00000319227.1 | 555 | 54aa | OTTHUMP00000198047 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NR1H3-029 | OTTHUMT00000391715.1 | 1673 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-028 | OTTHUMT00000391714.1 | 1183 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-015 | OTTHUMT00000319228.1 | 726 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-039 | OTTHUMT00000395636.1 | 610 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-038 | OTTHUMT00000395637.1 | 588 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-026 | OTTHUMT00000319239.1 | 569 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-022 | OTTHUMT00000319235.1 | 549 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-036 | OTTHUMT00000395635.1 | 549 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-035 | OTTHUMT00000395638.1 | 542 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NR1H3-005 | OTTHUMT00000319218.2 | 1704 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NR1H3-008 | OTTHUMT00000319221.1 | 852 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NR1H3-024 | OTTHUMT00000319237.1 | 706 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NR1H3-021 | OTTHUMT00000319234.1 | 572 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NR1H3-018 | OTTHUMT00000319231.1 | 559 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NR1H3-009 | OTTHUMT00000319222.1 | 539 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NR1H3-025 | OTTHUMT00000319238.1 | 510 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
