Description
HNF1 homeobox A
Synonyms
HNF1, LFB1
Location
Chromosome 12: 120,978,543-121,002,512 forward strand.
VEGA68:CM000674.2
About this gene
This gene has 25 transcripts (splice variants), 3 orthologues and 2 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| HNF1A-001 | OTTHUMT00000320957.5 | 3442 | 631aa | OTTHUMP00000198944 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS9209 | A0A0A0MQU7 | |
| HNF1A-025 | OTTHUMT00000402514.1 | 2014 | 638aa | OTTHUMP00000240206 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS76611 | F5H0K0 | |
| HNF1A-023 | OTTHUMT00000402512.1 | 3332 | 662aa | OTTHUMP00000240204 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A0A0MTK8 | |
| HNF1A-002 | OTTHUMT00000320958.3 | 2337 | 542aa | OTTHUMP00000273442 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | U3KQS6 | |
| HNF1A-005 | OTTHUMT00000402495.1 | 2819 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-007 | OTTHUMT00000402497.1 | 2671 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-004 | OTTHUMT00000402494.1 | 2473 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-013 | OTTHUMT00000402503.1 | 2344 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-012 | OTTHUMT00000402502.1 | 1973 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-008 | OTTHUMT00000402498.1 | 1936 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-011 | OTTHUMT00000402501.1 | 1529 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-019 | OTTHUMT00000402504.1 | 1493 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-022 | OTTHUMT00000402511.1 | 1493 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-009 | OTTHUMT00000402499.1 | 1352 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-010 | OTTHUMT00000402500.1 | 1091 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-018 | OTTHUMT00000402508.1 | 713 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| HNF1A-024 | OTTHUMT00000402513.1 | 3039 | 119aa | OTTHUMP00000240205 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HNF1A-006 | OTTHUMT00000417039.1 | 3030 | 356aa | OTTHUMP00000247740 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H0YND5 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| HNF1A-015 | OTTHUMT00000402506.1 | 1649 | 278aa | OTTHUMP00000240202 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HNF1A-014 | OTTHUMT00000402505.1 | 1594 | 247aa | OTTHUMP00000240201 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HNF1A-016 | OTTHUMT00000402507.1 | 725 | 41aa | OTTHUMP00000240203 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| HNF1A-017 | OTTHUMT00000402510.4 | 582 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HNF1A-020 | OTTHUMT00000402509.3 | 434 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| HNF1A-003 | OTTHUMT00000320959.3 | 3002 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| HNF1A-021 | OTTHUMT00000402515.1 | 762 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
