Description
striatin, calmodulin binding protein 4
Synonyms
zinedin, PPP2R6C, ZIN
Location
Chromosome 19: 46,719,507-46,746,994 reverse strand.
VEGA68:CM000681.2
About this gene
This gene has 25 transcripts (splice variants), 3 orthologues and 2 paralogues.
Transcripts
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
STRN4-002 | OTTHUMT00000466606.2 | 3628 | 760aa | OTTHUMP00000271669 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS42581 | - | |
STRN4-001 | OTTHUMT00000466607.2 | 3210 | 753aa | OTTHUMP00000271670 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS12690 | Q9NRL3 | |
STRN4-004 | OTTHUMT00000466610.1 | 2608 | 634aa | OTTHUMP00000271671 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
STRN4-021 | OTTHUMT00000466613.3 | 951 | 317aa | OTTHUMP00000271673 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
STRN4-023 | OTTHUMT00000466611.1 | 788 | 198aa | OTTHUMP00000271672 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
STRN4-008 | OTTHUMT00000466624.3 | 675 | 139aa | OTTHUMP00000271675 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
STRN4-013 | OTTHUMT00000466627.3 | 582 | 103aa | OTTHUMP00000271678 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
STRN4-012 | OTTHUMT00000466628.3 | 570 | 114aa | OTTHUMP00000271679 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
STRN4-009 | OTTHUMT00000466625.3 | 560 | 73aa | OTTHUMP00000271676 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
STRN4-024 | OTTHUMT00000467740.1 | 3017 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
STRN4-003 | OTTHUMT00000466617.2 | 1551 | 257aa | OTTHUMP00000272283 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
STRN4-017 | OTTHUMT00000466619.3 | 1267 | 316aa | OTTHUMP00000272284 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
STRN4-010 | OTTHUMT00000466623.1 | 913 | 180aa | OTTHUMP00000271674 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
STRN4-018 | OTTHUMT00000466615.2 | 850 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
STRN4-025 | OTTHUMT00000467741.1 | 631 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
STRN4-011 | OTTHUMT00000466626.2 | 565 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
STRN4-015 | OTTHUMT00000466622.1 | 556 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
STRN4-019 | OTTHUMT00000466618.1 | 554 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
STRN4-006 | OTTHUMT00000466609.1 | 2692 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
STRN4-007 | OTTHUMT00000466608.1 | 2240 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
STRN4-005 | OTTHUMT00000466612.1 | 1602 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
STRN4-020 | OTTHUMT00000466616.2 | 1125 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
STRN4-014 | OTTHUMT00000466621.2 | 814 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
STRN4-016 | OTTHUMT00000466620.1 | 568 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
STRN4-022 | OTTHUMT00000466614.1 | 448 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |