Description
lipopolysaccharide-induced TNF factor
Location
Chromosome 16: 11,556,557-11,636,381 reverse strand.
About this transcript
This transcript has 4 exons and is annotated with 3 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000177415 Show transcript tableHide transcript table
Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
---|---|---|---|---|---|---|---|---|
LITAF-001 | OTTHUMT00000436794.3 | 2632 | 161aa | OTTHUMP00000256583 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS32386 | Q99732 | |
LITAF-005 | OTTHUMT00000436819.1 | 2356 | 161aa | OTTHUMP00000256598 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS32386 | Q99732 | |
LITAF-002 | OTTHUMT00000436818.1 | 2292 | 152aa | OTTHUMP00000256597 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45411 | - | |
LITAF-006 | OTTHUMT00000436820.1 | 1118 | 161aa | OTTHUMP00000256599 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS32386 | Q99732 | |
LITAF-010 | OTTHUMT00000436827.1 | 717 | 161aa | OTTHUMP00000256604 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS32386 | Q99732 | |
LITAF-017 | OTTHUMT00000436826.1 | 603 | 161aa | OTTHUMP00000256603 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS32386 | Q99732 | |
LITAF-016 | OTTHUMT00000436821.1 | 677 | 75aa | OTTHUMP00000256600 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
LITAF-009 | OTTHUMT00000436829.2 | 593 | 137aa | OTTHUMP00000256606 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | I3L1I9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LITAF-013 | OTTHUMT00000436834.3 | 587 | 39aa | OTTHUMP00000256611 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LITAF-012 | OTTHUMT00000436828.2 | 579 | 153aa | OTTHUMP00000256605 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | I3L3U8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LITAF-018 | OTTHUMT00000436835.2 | 556 | 33aa | OTTHUMP00000256612 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LITAF-019 | OTTHUMT00000436833.2 | 554 | 88aa | OTTHUMP00000256610 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LITAF-007 | OTTHUMT00000436830.2 | 553 | 136aa | OTTHUMP00000256607 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | I3L1P1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
LITAF-008 | OTTHUMT00000436831.1 | 548 | 126aa | OTTHUMP00000256608 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | I3L329 | |
LITAF-011 | OTTHUMT00000436825.1 | 516 | 68aa | OTTHUMP00000256602 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | I3L1H3 | |
LITAF-004 | OTTHUMT00000436832.1 | 486 | 105aa | OTTHUMP00000256609 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
LITAF-003 | OTTHUMT00000436823.1 | 347 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
LITAF-015 | OTTHUMT00000436824.1 | 773 | 81aa | OTTHUMP00000256601 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
LITAF-014 | OTTHUMT00000436822.2 | 582 | 10aa | OTTHUMP00000258648 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |