Transcript: Lhx2-001 OTTMUST00000030849.2

Description

LIM homeobox protein 2

Location

Chromosome 2: 38,350,759-38,369,733 forward strand.

About this transcript

This transcript has 5 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000012866 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Lhx2-001	OTTMUST00000030849.2	2840	406aa	OTTMUSP00000013821	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS16008	Q9Z0S2
Lhx2-003	OTTMUST00000030851.2	1696	365aa	OTTMUSP00000013822	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS71048	F6Z9H5
Lhx2-005	OTTMUST00000030853.2	654	192aa	OTTMUSP00000013823	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6SM03	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Lhx2-002	OTTMUST00000030850.5	375	108aa	OTTMUSP00000040675	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0A0MQK9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Lhx2-007	OTTMUST00000103343.1	592	49aa	OTTMUSP00000057717	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Lhx2-006	OTTMUST00000103344.1	1243	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Lhx2-004	OTTMUST00000030852.1	701	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 2,840 bps Translation length: 406 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16008

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 29/06/2005)

Alternative symbols

RP23-399K8.3-001

Other assemblies

This transcript maps to 38,350,759-38,369,733 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000000253

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Lhx2-001 OTTMUST00000030849.2

Summary

Transcript-based displays