Description
lipocalin 10
Location
Chromosome 9: 136,738,167-136,743,356 reverse strand.
VEGA68:CM000671.2
About this gene
This gene has 10 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| LCN10-001 | OTTHUMT00000318061.1 | 723 | 200aa | OTTHUMP00000197345 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS35182 | - | |
| LCN10-006 | OTTHUMT00000384131.1 | 615 | 164aa | OTTHUMP00000229789 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| LCN10-002 | OTTHUMT00000318062.3 | 564 | 187aa | OTTHUMP00000197346 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q6JVE6 | |
| LCN10-009 | OTTHUMT00000384129.1 | 1940 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LCN10-008 | OTTHUMT00000384130.1 | 1899 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LCN10-003 | OTTHUMT00000055106.2 | 1780 | 86aa | OTTHUMP00000229788 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| LCN10-010 | OTTHUMT00000384134.1 | 570 | 37aa | OTTHUMP00000229792 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| LCN10-007 | OTTHUMT00000384132.1 | 443 | 75aa | OTTHUMP00000229790 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| LCN10-004 | OTTHUMT00000318063.2 | 3262 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LCN10-005 | OTTHUMT00000055105.1 | 2505 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
