Description
SMAD family member 5
Synonyms
JV5-1, Dwfc
Location
Chromosome 5: 136,132,845-136,188,747 forward strand.
VEGA68:CM000667.2
About this gene
This gene has 12 transcripts (splice variants), 5 orthologues and 4 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SMAD5-001 | OTTHUMT00000372096.4 | 7012 | 465aa | OTTHUMP00000276201 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS75308 | Q68DB7 | |
| SMAD5-004 | OTTHUMT00000372099.2 | 854 | 1aa | OTTHUMP00000223334 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMAD5-003 | OTTHUMT00000372098.2 | 847 | 134aa | OTTHUMP00000223333 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RBB4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMAD5-002 | OTTHUMT00000372097.2 | 669 | 128aa | OTTHUMP00000223332 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RIZ9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMAD5-010 | OTTHUMT00000372105.2 | 638 | 174aa | OTTHUMP00000223337 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YAK7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMAD5-008 | OTTHUMT00000372103.2 | 548 | 80aa | OTTHUMP00000223336 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6R9D4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMAD5-005 | OTTHUMT00000372100.1 | 368 | 1aa | OTTHUMP00000223335 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMAD5-006 | OTTHUMT00000372101.1 | 819 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SMAD5-012 | OTTHUMT00000372107.1 | 523 | 60aa | OTTHUMP00000223338 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H0YAM3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMAD5-011 | OTTHUMT00000372106.2 | 588 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMAD5-007 | OTTHUMT00000372102.1 | 547 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SMAD5-009 | OTTHUMT00000372104.1 | 577 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
