Description
granulin
Synonyms
PCDGF, CLN11, PGRN
Location
Chromosome 17: 44,345,086-44,353,102 forward strand.
VEGA68:CM000679.2
About this gene
This gene has 22 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| GRN-001 | OTTHUMT00000457766.2 | 2342 | 593aa | OTTHUMP00000267554 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11483 | P28799 | |
| GRN-002 | OTTHUMT00000457775.1 | 1632 | 436aa | OTTHUMP00000267562 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K7EQ05 | |
| GRN-003 | OTTHUMT00000457779.1 | 1557 | 388aa | OTTHUMP00000267564 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| GRN-008 | OTTHUMT00000457768.2 | 763 | 149aa | OTTHUMP00000267556 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-022 | OTTHUMT00000457782.1 | 665 | 110aa | OTTHUMP00000267565 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| GRN-016 | OTTHUMT00000457773.2 | 614 | 191aa | OTTHUMP00000267560 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-011 | OTTHUMT00000457771.2 | 585 | 135aa | OTTHUMP00000267558 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-009 | OTTHUMT00000457769.2 | 562 | 37aa | OTTHUMP00000267557 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-017 | OTTHUMT00000457774.2 | 558 | 172aa | OTTHUMP00000267561 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-005 | OTTHUMT00000457763.2 | 546 | 111aa | OTTHUMP00000267551 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-013 | OTTHUMT00000457767.2 | 546 | 163aa | OTTHUMP00000267555 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-010 | OTTHUMT00000457772.2 | 541 | 142aa | OTTHUMP00000267559 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-006 | OTTHUMT00000457764.2 | 535 | 62aa | OTTHUMP00000267552 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-007 | OTTHUMT00000457765.2 | 526 | 136aa | OTTHUMP00000267553 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| GRN-004 | OTTHUMT00000457761.1 | 1840 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| GRN-018 | OTTHUMT00000457777.1 | 843 | 189aa | OTTHUMP00000267563 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| GRN-019 | OTTHUMT00000457780.1 | 437 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| GRN-021 | OTTHUMT00000457781.1 | 600 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| GRN-012 | OTTHUMT00000457762.1 | 588 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| GRN-020 | OTTHUMT00000457778.1 | 562 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| GRN-015 | OTTHUMT00000457776.1 | 560 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| GRN-014 | OTTHUMT00000457770.1 | 550 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
