Description
SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Synonyms
VPS22, EAP30, Dot3
Location
Chromosome 17: 48,929,316-48,945,117 reverse strand.
VEGA68:CM000679.2
About this gene
This gene has 17 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SNF8-001 | OTTHUMT00000361172.1 | 2319 | 258aa | OTTHUMP00000218490 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11541 | Q96H20 | |
| SNF8-002 | OTTHUMT00000361173.1 | 951 | 257aa | OTTHUMP00000218491 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS82156 | - | |
| SNF8-006 | OTTHUMT00000361177.2 | 1051 | 167aa | OTTHUMP00000218493 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SNF8-004 | OTTHUMT00000361175.1 | 775 | 141aa | OTTHUMP00000218492 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SNF8-007 | OTTHUMT00000361178.1 | 742 | 103aa | OTTHUMP00000218494 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SNF8-016 | OTTHUMT00000440743.1 | 700 | 53aa | OTTHUMP00000258632 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SNF8-011 | OTTHUMT00000361182.2 | 677 | 16aa | OTTHUMP00000265146 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SNF8-017 | OTTHUMT00000440742.1 | 583 | 36aa | OTTHUMP00000258631 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SNF8-008 | OTTHUMT00000361179.1 | 560 | 81aa | OTTHUMP00000218495 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SNF8-015 | OTTHUMT00000364054.1 | 571 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SNF8-003 | OTTHUMT00000361174.1 | 1899 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SNF8-009 | OTTHUMT00000361180.1 | 863 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SNF8-010 | OTTHUMT00000361181.1 | 823 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SNF8-012 | OTTHUMT00000361183.1 | 687 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SNF8-014 | OTTHUMT00000361185.1 | 455 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SNF8-005 | OTTHUMT00000361176.1 | 445 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SNF8-013 | OTTHUMT00000361184.1 | 429 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
