Description
Transcription factor SOX-5
Synonyms
MGC35153, L-SOX5
Location
Chromosome 12: 23,529,500-23,951,032 reverse strand.
VEGA68:CM000674.2
About this gene
This gene has 16 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SOX5-003 | OTTHUMT00000402005.3 | 6975 | 750aa | OTTHUMP00000239958 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS44844 | - | |
| SOX5-002 | OTTHUMT00000402006.2 | 4261 | 763aa | OTTHUMP00000239959 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8699 | P35711 | |
| SOX5-008 | OTTHUMT00000402008.1 | 2769 | 728aa | OTTHUMP00000239960 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS81672 | - | |
| SOX5-007 | OTTHUMT00000402010.1 | 2589 | 753aa | OTTHUMP00000239962 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58217 | - | |
| SOX5-009 | OTTHUMT00000402009.1 | 2365 | 642aa | OTTHUMP00000239961 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58216 | - | |
| SOX5-001 | OTTHUMT00000402000.1 | 1379 | 377aa | OTTHUMP00000239955 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS41761 | - | |
| SOX5-016 | OTTHUMT00000402059.1 | 758 | 241aa | OTTHUMP00000239987 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SOX5-004 | OTTHUMT00000402014.1 | 638 | 128aa | OTTHUMP00000239964 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SOX5-010 | OTTHUMT00000402015.2 | 617 | 144aa | OTTHUMP00000239965 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SOX5-005 | OTTHUMT00000402007.1 | 2942 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SOX5-006 | OTTHUMT00000402011.1 | 1816 | 509aa | OTTHUMP00000239963 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SOX5-011 | OTTHUMT00000402016.1 | 606 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SOX5-014 | OTTHUMT00000402057.1 | 576 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SOX5-015 | OTTHUMT00000402058.1 | 570 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SOX5-012 | OTTHUMT00000402012.1 | 376 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SOX5-013 | OTTHUMT00000402013.1 | 855 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
