Description
cathepsin D
Synonyms
CLN10
Location
Chromosome 11: 1,752,752-1,764,573 reverse strand.
VEGA68:CM000673.2
About this gene
This gene has 15 transcripts (splice variants), 9 orthologues and 2 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| CTSD-001 | OTTHUMT00000104272.5 | 2123 | 412aa | OTTHUMP00000042282 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS7725 | V9HWI3 | |
| CTSD-008 | OTTHUMT00000489867.1 | 2003 | 406aa | OTTHUMP00000282336 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GV23 | |
| CTSD-014 | OTTHUMT00000489877.1 | 1982 | 409aa | OTTHUMP00000282346 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GVD5 | |
| CTSD-010 | OTTHUMT00000489871.2 | 1790 | 405aa | OTTHUMP00000282339 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GW44 | |
| CTSD-013 | OTTHUMT00000489878.1 | 1597 | 405aa | OTTHUMP00000282347 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GVP3 | |
| CTSD-012 | OTTHUMT00000489872.2 | 1512 | 410aa | OTTHUMP00000282340 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GWE8 | |
| CTSD-005 | OTTHUMT00000105337.3 | 946 | 299aa | OTTHUMP00000196039 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JH19 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CTSD-002 | OTTHUMT00000105334.15 | 907 | 199aa | OTTHUMP00000042859 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F8W787 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CTSD-004 | OTTHUMT00000105336.3 | 690 | 189aa | OTTHUMP00000199813 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C1V0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CTSD-009 | OTTHUMT00000489868.1 | 374 | 94aa | OTTHUMP00000282337 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GV01 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| CTSD-007 | OTTHUMT00000489866.1 | 1899 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| CTSD-006 | OTTHUMT00000142060.3 | 2006 | 276aa | OTTHUMP00000198692 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F8WD96 | |
| CTSD-015 | OTTHUMT00000489876.1 | 1262 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CTSD-011 | OTTHUMT00000489870.2 | 1200 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CTSD-003 | OTTHUMT00000105335.3 | 783 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
